Scaffold Ga0209709_10011778

Overview

Basic Information

• Taxon OID: 3300027779
• Scaffold ID: Ga0209709_10011778
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6197
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002593	Metagenome / Metatranscriptome	545	Y
F002682	Metagenome / Metatranscriptome	537	Y
F099426	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209709_1001177812	F002682	AGG	MAGKQIGSDEKPVTFRSPIYKNTHGSKGANPRPGFYTDDYRDNWERIFGNKNKAEEKKNDND
Ga0209709_100117782	F099426	GGAG	MKIRKVKRRVMPTFEIITNKKAPPRITTPKSFYRDLVGSMKAGDWFVLDAEDKDKVSASIIKYARGRHSLYQHPEIEDKYVCTITK
Ga0209709_100117783	F002593	GGAG	MSKLIYSKNGSATTKSIRSASPMLQAIWDRSHMFGANIVRVRANLDRFGNDTGKTFDSYHHEKVSVYKQKDEVHESNALYFAQKIPVTKSNKGMQILEVATNLDVQDTLDIIDEIQYYAETSFLGRLYNRIVYGTPMSIAS