NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209709_10010696

Scaffold Ga0209709_10010696


Overview

Basic Information
Taxon OID3300027779 Open in IMG/M
Scaffold IDGa0209709_10010696 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6574
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (35.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)79
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005103Metagenome / Metatranscriptome412Y
F058211Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0209709_100106962F005103N/AMPNTDTEIQIFINKKEMLYSHQNMIRAINSFFPYLTNDDLNEMSEYITTLKKHRKEKEAESKIEVEKHSWPYPDTIEHP
Ga0209709_100106965F058211N/AMIPVENNSWDYVQGLIEKEISSAFKLRIKENNDKMKFEKDHPYMKRLDEALKQYSVVKVIDDNGAVHGHDFEEMKQVILDTLFTNYLGETVRK

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