Scaffold Ga0209709

Basic Information
Taxon OID	3300027779 Open in IMG/M
Scaffold ID	Ga0209709_10010464 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027779 Open in IMG/M

Scaffold ID

Ga0209709_10010464 Open in IMG/M

Source Dataset Name

Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6670
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (56.25%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

6670

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (56.25%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	75.235	Long. (^o)	-150.0691	Alt. (m)	Depth (m)	79
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Arctic Ocean: Canada Basin

Coordinates

Lat. (^o)

75.235

Long. (^o)

-150.0691

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007771	Metagenome / Metatranscriptome	345	Y
F008692	Metagenome / Metatranscriptome	329	Y
F018265	Metagenome / Metatranscriptome	236	Y
F026028	Metagenome / Metatranscriptome	199	Y
F048371	Metagenome	148	Y
F063775	Metagenome	129	Y
F073661	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209709_1001046412	F048371	N/A	MVVDFGKITGVMFFALIIFSYVSFRVEWNYYMFIKMIQFFQYIDLSLEYWVFLDRYVFNGAL
Ga0209709_1001046414	F008692	N/A	MAKRKGNKQKRQTKDEFYMPTSEEEFQSDLDAQDMRYFQYCREQEEMYNDPVMNWSGLR
Ga0209709_100104642	F026028	AGGA	MSICTNCNHRVTISRAIEVGQLWNNEPFIGVVCSDKCKEEIEKKVADGTWMVMRPFPVREYDDDGLPKAITDKQFGVE
Ga0209709_100104643	F063775	GAG	MKIDMSLNRSLDELLSSYWEFRDSDEVKTEEEESEFGALQDCLDGNFGFVSHLM
Ga0209709_100104645	F018265	N/A	MSIELHTLRAVKITQNIFELQKVNREIMEVKKIVTMLENRKAELETWM
Ga0209709_100104646	F007771	GGA	METIIHAKNIDKKVRLALYGMLHHSATKLFPRRMKHVSIKLHLKHYVFDGVAMIEEDTPIINPRNFKIIIDPYRLEKDDWERERNYSEWVSELLRTLAHEMVHVKQYVMSELTFKKGQMCWKKQKVDFKSEDDYYCSPHEVEAYGKEKWLQLGYTTTWNKIETEKENG
Ga0209709_100104648	F073661	GAG	MTLDVKEMAMVVKSLRSVRNDDSKWNEIETAWSAMEEVLSSSSLNRTCAKVGFDSVDPYATCSVYEGTKKVYKIW

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209709_10010464

Overview

Ecosystem & Geography

Associated Families

Sequences