Scaffold Ga0209709_10008616

Overview

Basic Information

• Taxon OID: 3300027779
• Scaffold ID: Ga0209709_10008616
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7564
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (88.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006146	Metagenome / Metatranscriptome	380	Y
F032811	Metagenome	179	Y
F063775	Metagenome	129	Y
F084346	Metagenome / Metatranscriptome	112	Y
F105371	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209709_1000861612	F032811	GAG	MRVSPGCYFEPEEEESIDPIRGIKTSANIKEPTYRRKSFLEDIPDNYSERIMRLKRTTRIVPEREVRTPEGFTIAIAYNKSGYQLIPKEDLKYEI
Ga0209709_1000861615	F006146	N/A	MIITTATVIIVQALVVSWIVFTHPEPCPRKYRVTQEHGGVLTNSADVHRYCELDYGGKFVLKEVDK
Ga0209709_100086162	F084346	GAG	MTFQTIHPRYQVETSKEQSMLSDKQKAEEIYQKYVNQKIPCELFLDGKLQMEYKPH
Ga0209709_100086164	F063775	GAG	MEIDLSLNRSLDELLSSYWEFRDSDEVKTEEEESEFGALEDCLDGSFGFVSHLM
Ga0209709_100086166	F105371	GAG	MKKIEFKFGRKVVKTFDNMDDTNILLRKLIAIRNDDSAWEVGEFTMGNNIEIGLIAAFKMEELLETVVDVFDSLSIWINGNKVRTVWAKGF