NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209709_10008317

Scaffold Ga0209709_10008317


Overview

Basic Information
Taxon OID3300027779 Open in IMG/M
Scaffold IDGa0209709_10008317 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7731
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (57.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)79
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013819Metagenome / Metatranscriptome268Y
F080512Metagenome115N
F087308Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0209709_1000831712F013819GAGMANKYFSINVKNNIKQFTKKLNRFQKSQVPFVAARTLTDVAFKVRFNAIDKSFPQAFKNSVVASRMAKGRLRVIKANKRDYNMGMLSAKVLDKSSNPLEYLVTHQTGGMKRAKTGNYIAVPSSKIKKKLGIRRNPQWRPTAVRDMAGVRTVKKGKFVRGKSEQAIMKGGERFYSLVKTVPIPKRLFFEENAEKTVQRKIQYIWTTQLNRALQTSKYK
Ga0209709_1000831718F087308N/AMRIVIMILHLASGDVVKLPITLTADQSCSDKLIQIVQEDSIGTSIYYKGKQVFAYYCKKGTGEYIS
Ga0209709_100083173F080512GGGGGMVNGCYNIQKYQAKSDCGDQFLNESYSIAVVFLKTVNLTTAWQLGTELFTKLKAGLMIKTITNRSVILQICRLIMYLNLKKTPRNILKIHHKKGQHYYLLYWIEHSVIIMVQVKYLTMNCSKCLKEKDKLYYLNSDCSHWDDHFYCKECFRKLFKMLPEKVKLTFYGYKGKEKDVS
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