Basic Information | |
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Taxon OID | 3300027779 Open in IMG/M |
Scaffold ID | Ga0209709_10005590 Open in IMG/M |
Source Dataset Name | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9859 |
Total Scaffold Genes | 24 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (75.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Arctic Ocean: Canada Basin | |||||||
Coordinates | Lat. (o) | 75.235 | Long. (o) | -150.0691 | Alt. (m) | Depth (m) | 79 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F009527 | Metagenome / Metatranscriptome | 316 | Y |
F054789 | Metagenome / Metatranscriptome | 139 | N |
F067591 | Metagenome / Metatranscriptome | 125 | N |
F090175 | Metagenome / Metatranscriptome | 108 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209709_1000559011 | F067591 | AGG | MVTWQKQTSNIAMALAVVGGLWMALTVGLGDVFNIITDPASVEASTAASLGGIDFIDRIAVAGVVLTLVGTAGFGVIKSSSNNPPFLNTILKFSPLIIGFVAFSAFGTEAWDLVTGNRTWSAFDDVQNSYMLFLASSMVAGVVSLLDRR |
Ga0209709_1000559017 | F090175 | AGGAGG | MSEEVGEKGSSPPIGGRTWADVFVGATYITGGVVFLAVMGGIVYFLVGKVPFWFFIAIGSSLVFIPFMMERAKEDSSLILVTDGPHRLTEYRVGNKVGLEIDGNPVYFQSKSGVNRKVLSSINVENKTAIGSEFANHTQIDQVRDLTTLQRMVDMLQSTLKESRISSQTVGVEVEKQSIQIVDWALKTIYGAIIPTEISEAFGIDEVESELEFDDTVEDLAETFE |
Ga0209709_1000559018 | F009527 | GGAG | MKRNMFPPSIINLLLQEGQRWKVNGEVREALGTGIIPIVASARGGKTSLAYCFIDYVIEHTKRPVILDSFPQIVIDEGIPDHWKGRVSNTSFNDIAKVDEPAVWLLDDSATHFNSRSAMSGANQTLAKAAGVLSHFGGGMTVLFTTQSMSGIDLSLLRYTTISPIIRWVDADLIPQERKEWKAEVEHGQFELRRVCKDVRMRDFFWSAKDRMLVKAPYPKFLQKEVNVKKADLLSRPMRYHSIEEKEVMLGIVKPPQKRRQKRKKVIDDE |
Ga0209709_1000559019 | F054789 | N/A | MMSREQQRKFDRMAAARLSKLHGGIPKHIALSNQRSITLRNKLKRLGLEGSHIQAALDMVDEMGLQEVMSNQPLGSRFASMPQAKRKSKVWKP |
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