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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027779 Open in IMG/M |
| Scaffold ID | Ga0209709_10005590 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9859 |
| Total Scaffold Genes | 24 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (75.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Arctic Ocean: Canada Basin | |||||||
| Coordinates | Lat. (o) | 75.235 | Long. (o) | -150.0691 | Alt. (m) | Depth (m) | 79 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009527 | Metagenome / Metatranscriptome | 316 | Y |
| F054789 | Metagenome / Metatranscriptome | 139 | N |
| F067591 | Metagenome / Metatranscriptome | 125 | N |
| F090175 | Metagenome / Metatranscriptome | 108 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209709_1000559011 | F067591 | AGG | MVTWQKQTSNIAMALAVVGGLWMALTVGLGDVFNIITDPASVEASTAASLGGIDFIDRIAVAGVVLTLVGTAGFGVIKSSSNNPPFLNTILKFSPLIIGFVAFSAFGTEAWDLVTGNRTWSAFDDVQNSYMLFLASSMVAGVVSLLDRR |
| Ga0209709_1000559017 | F090175 | AGGAGG | MSEEVGEKGSSPPIGGRTWADVFVGATYITGGVVFLAVMGGIVYFLVGKVPFWFFIAIGSSLVFIPFMMERAKEDSSLILVTDGPHRLTEYRVGNKVGLEIDGNPVYFQSKSGVNRKVLSSINVENKTAIGSEFANHTQIDQVRDLTTLQRMVDMLQSTLKESRISSQTVGVEVEKQSIQIVDWALKTIYGAIIPTEISEAFGIDEVESELEFDDTVEDLAETFE |
| Ga0209709_1000559018 | F009527 | GGAG | MKRNMFPPSIINLLLQEGQRWKVNGEVREALGTGIIPIVASARGGKTSLAYCFIDYVIEHTKRPVILDSFPQIVIDEGIPDHWKGRVSNTSFNDIAKVDEPAVWLLDDSATHFNSRSAMSGANQTLAKAAGVLSHFGGGMTVLFTTQSMSGIDLSLLRYTTISPIIRWVDADLIPQERKEWKAEVEHGQFELRRVCKDVRMRDFFWSAKDRMLVKAPYPKFLQKEVNVKKADLLSRPMRYHSIEEKEVMLGIVKPPQKRRQKRKKVIDDE |
| Ga0209709_1000559019 | F054789 | N/A | MMSREQQRKFDRMAAARLSKLHGGIPKHIALSNQRSITLRNKLKRLGLEGSHIQAALDMVDEMGLQEVMSNQPLGSRFASMPQAKRKSKVWKP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |