NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209709_10005590

Scaffold Ga0209709_10005590


Overview

Basic Information
Taxon OID3300027779 Open in IMG/M
Scaffold IDGa0209709_10005590 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9859
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)79
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009527Metagenome / Metatranscriptome316Y
F054789Metagenome / Metatranscriptome139N
F067591Metagenome / Metatranscriptome125N
F090175Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0209709_1000559011F067591AGGMVTWQKQTSNIAMALAVVGGLWMALTVGLGDVFNIITDPASVEASTAASLGGIDFIDRIAVAGVVLTLVGTAGFGVIKSSSNNPPFLNTILKFSPLIIGFVAFSAFGTEAWDLVTGNRTWSAFDDVQNSYMLFLASSMVAGVVSLLDRR
Ga0209709_1000559017F090175AGGAGGMSEEVGEKGSSPPIGGRTWADVFVGATYITGGVVFLAVMGGIVYFLVGKVPFWFFIAIGSSLVFIPFMMERAKEDSSLILVTDGPHRLTEYRVGNKVGLEIDGNPVYFQSKSGVNRKVLSSINVENKTAIGSEFANHTQIDQVRDLTTLQRMVDMLQSTLKESRISSQTVGVEVEKQSIQIVDWALKTIYGAIIPTEISEAFGIDEVESELEFDDTVEDLAETFE
Ga0209709_1000559018F009527GGAGMKRNMFPPSIINLLLQEGQRWKVNGEVREALGTGIIPIVASARGGKTSLAYCFIDYVIEHTKRPVILDSFPQIVIDEGIPDHWKGRVSNTSFNDIAKVDEPAVWLLDDSATHFNSRSAMSGANQTLAKAAGVLSHFGGGMTVLFTTQSMSGIDLSLLRYTTISPIIRWVDADLIPQERKEWKAEVEHGQFELRRVCKDVRMRDFFWSAKDRMLVKAPYPKFLQKEVNVKKADLLSRPMRYHSIEEKEVMLGIVKPPQKRRQKRKKVIDDE
Ga0209709_1000559019F054789N/AMMSREQQRKFDRMAAARLSKLHGGIPKHIALSNQRSITLRNKLKRLGLEGSHIQAALDMVDEMGLQEVMSNQPLGSRFASMPQAKRKSKVWKP

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