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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027779 Open in IMG/M |
| Scaffold ID | Ga0209709_10005197 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10290 |
| Total Scaffold Genes | 17 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (76.47%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Arctic Ocean: Canada Basin | |||||||
| Coordinates | Lat. (o) | 75.235 | Long. (o) | -150.0691 | Alt. (m) | Depth (m) | 79 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012465 | Metagenome / Metatranscriptome | 280 | Y |
| F013191 | Metagenome / Metatranscriptome | 273 | N |
| F064816 | Metagenome / Metatranscriptome | 128 | N |
| F087323 | Metagenome / Metatranscriptome | 110 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209709_1000519713 | F013191 | GAGG | MLIVIGNGQSKSISDFNLFKKHITYGCDLIYRKFVPTHLICQDIDAQLELITNDLTKKYKCYFKGFDLIPSMHYDMLKQTTDKRLKIGENQPKTDKFIQFAHEGIMYFIWIDSSDLTENIDWWSDNKFDEWVSDTVALRLACQQNPNETIYCVGFDYFHNQTSEGIYLGSSIIDFQNENQDSWIGQHKHIEEEFSNSKFIFVGKDMDYGEFENLLNK |
| Ga0209709_1000519716 | F087323 | AGAAG | MQSIGGNLLQDLDKHHANHNGKGERSISTTLLRARSEDGTQSLFSISSKRLSIHADVPKKKVGWICLPFQYGQR |
| Ga0209709_100051976 | F064816 | GGAG | MAEQEVQQNFKTVDIIDYSMQSNPTQVHDAFGQIITNKVIDGLETRKREVSARMFSDKEEISIEEPTTEVPAEPESETTETQ |
| Ga0209709_100051978 | F012465 | GGTGG | MKTYNEFRKSIGFPVKERKVEEVIRSEKPLKEDVVDQLRSVVKKKKESDIKFKSGTSVPIDPESAKVILKTFDSLNSSNKKKMQDNINKDTKSFLKILDFAFSNAK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |