Scaffold Ga0209709_10004985

Overview

Basic Information

• Taxon OID: 3300027779
• Scaffold ID: Ga0209709_10004985
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10573
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (12.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023875	Metagenome	208	N
F029898	Metagenome	187	N
F033643	Metagenome / Metatranscriptome	177	Y
F048555	Metagenome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209709_1000498510	F023875	N/A	MFLYGVFAIILCLYDITYTHSLFWITMLFLSLIQFFAYANGLKAQLENQFIKDFNETIKKTLEEQQQKEYNQFRNN
Ga0209709_1000498511	F048555	N/A	MKSVTITIGDYDLEIIEQIFEKESAFSPQDPRDELMIEVMRQVKDNPKVNLGADEEEEYKKAKTRFSKNLGADGKQVVSRDGQYLSPEEVGLSN
Ga0209709_1000498523	F029898	AGAAG	MKKSPVRTQELTYKREYDGEVKNYFVNIFEDWDSHYIGYTYDTHGANCGVKRFNKDSIQKMKAAKRNFALINV
Ga0209709_1000498524	F033643	N/A	MRNETIVDEKPMFSASEIYPGFSMTLANGWEISVQWGRNHYCANQDNPNKESRRSTTAEVAIFAPDKDGSGRNWWSYDEDLNEVVEQPAETYVNGHLTTDQVANIISIISKKST