Scaffold Ga0209709_10003711

Overview

Basic Information

• Taxon OID: 3300027779
• Scaffold ID: Ga0209709_10003711
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12576
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001334	Metagenome / Metatranscriptome	720	Y
F013815	Metagenome / Metatranscriptome	268	Y
F023622	Metagenome / Metatranscriptome	209	Y
F068119	Metagenome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209709_1000371115	F023622	GAGG	MKTFKEFKGNPPTLISEQVYFKVSIPDMSPMFMKSSSESAVKLDMRMKLKPDVVKEVSIKRVTKSEMRKIYRDMGQGKEPEAEPDEKE
Ga0209709_1000371117	F013815	GGAG	MYFVQYEKTLPPWYSGTDKVQAETSEDAVKEFYKRHDPFEERVRSVRKVQDTYQK
Ga0209709_100037113	F068119	GAGG	MPEQESFLLLKSEVQTLKIKDEYRTKELDALMKKLDNSTSKLNDLSENIGRLLTAQDVNKTNDNEFRDEMKILHTRIGDLQDKMNVMIEKTETRMNTDVNQIYTKLESLERWRWITIGAATLVAWLLTNVIPKIIP
Ga0209709_100037114	F001334	GGA	MMKFKEYLQINADDSIEQVMSGEWITKSRTTWKATDDENNKIEIHNDGHDPELNGESWSVHTNTFAPKAFAFFCKQFIEEVKPSEVIHARTRIFPTT