Basic Information | |
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Taxon OID | 3300027779 Open in IMG/M |
Scaffold ID | Ga0209709_10003491 Open in IMG/M |
Source Dataset Name | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12999 |
Total Scaffold Genes | 24 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (54.17%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Arctic Ocean: Canada Basin | |||||||
Coordinates | Lat. (o) | 75.235 | Long. (o) | -150.0691 | Alt. (m) | Depth (m) | 79 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001493 | Metagenome | 683 | Y |
F001930 | Metagenome | 615 | Y |
F003561 | Metagenome | 479 | Y |
F005685 | Metagenome / Metatranscriptome | 393 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209709_1000349119 | F005685 | GAGG | MKKFNEYTSFEEKILVTLRKSPCDLMSLSHKLKEDIMPVSSMLEHLKVYDKVEMFKEKWQIKKKKN |
Ga0209709_1000349122 | F001930 | GGAG | MACWCKGGQLMKSFKQYLREKEIAWQQSTSKMIFDFGQIATMKIPLTSKTMEWIFKVQIPRATVFHVTTGIGLQNLIKIQNKKKAISAFFNMDSTYIDSGIKGGSGVVAELDANIIMSSKSDVLSMPDKTGRRWVELYNIDPKEKMHKELEKMLMDLAIKHDPKNKEFLKIEPDIGIGAWYKMQGDFQDDGKKMSLIIADYIDGVNDILKKHKKEIQGAVHGYYVRRGTVKFKHSSGRMVGGDSEMSEWNAWDEQVVDQIKIEKVHTYNTATRSADWVKDSVIPRLGKIPHKHWKSTKELSTYISQVAQAEVRTLGNSKG |
Ga0209709_1000349123 | F001493 | GGA | MKTFKQYIKEAPAWTESLSTMLFDLPREGLKDLKIPLSPAIFKRIWPESVRSRVFHLTDDEGIRKLKKIQGKKKSISAFYNIEDYILSSGIKTDGGYVVELEGDVLAAAPDDISSQPDKTGRRWITFSSLMNPSTASDPGLGGGSKLKKIEKDLEKLLVEILVKNGMGPYKKGLTTRELNRGWSYLGKSTGGKEKSIIIKDYIDGMEKIMKKYSKPLKSIFTDYAFDKELVPDPDSGDKALWDEVVVNNFKIKKIHVTEEFGEDWQDDDDIEGFPFELYPNGNGDLIDYIARTRNS |
Ga0209709_100034916 | F003561 | N/A | MKKKNGDQDNIVDLDQFRKEKFVLNIRVDGYYANLELGVYIHIVGITSPMHTKNTECHFIAEDHFGNLVTFCIDDTPPDFVSSSMQEFAAACMEAPDPESPLVS |
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