NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209709_10003491

Scaffold Ga0209709_10003491


Overview

Basic Information
Taxon OID3300027779 Open in IMG/M
Scaffold IDGa0209709_10003491 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12999
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (54.17%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)79
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001493Metagenome683Y
F001930Metagenome615Y
F003561Metagenome479Y
F005685Metagenome / Metatranscriptome393Y

Sequences

Protein IDFamilyRBSSequence
Ga0209709_1000349119F005685GAGGMKKFNEYTSFEEKILVTLRKSPCDLMSLSHKLKEDIMPVSSMLEHLKVYDKVEMFKEKWQIKKKKN
Ga0209709_1000349122F001930GGAGMACWCKGGQLMKSFKQYLREKEIAWQQSTSKMIFDFGQIATMKIPLTSKTMEWIFKVQIPRATVFHVTTGIGLQNLIKIQNKKKAISAFFNMDSTYIDSGIKGGSGVVAELDANIIMSSKSDVLSMPDKTGRRWVELYNIDPKEKMHKELEKMLMDLAIKHDPKNKEFLKIEPDIGIGAWYKMQGDFQDDGKKMSLIIADYIDGVNDILKKHKKEIQGAVHGYYVRRGTVKFKHSSGRMVGGDSEMSEWNAWDEQVVDQIKIEKVHTYNTATRSADWVKDSVIPRLGKIPHKHWKSTKELSTYISQVAQAEVRTLGNSKG
Ga0209709_1000349123F001493GGAMKTFKQYIKEAPAWTESLSTMLFDLPREGLKDLKIPLSPAIFKRIWPESVRSRVFHLTDDEGIRKLKKIQGKKKSISAFYNIEDYILSSGIKTDGGYVVELEGDVLAAAPDDISSQPDKTGRRWITFSSLMNPSTASDPGLGGGSKLKKIEKDLEKLLVEILVKNGMGPYKKGLTTRELNRGWSYLGKSTGGKEKSIIIKDYIDGMEKIMKKYSKPLKSIFTDYAFDKELVPDPDSGDKALWDEVVVNNFKIKKIHVTEEFGEDWQDDDDIEGFPFELYPNGNGDLIDYIARTRNS
Ga0209709_100034916F003561N/AMKKKNGDQDNIVDLDQFRKEKFVLNIRVDGYYANLELGVYIHIVGITSPMHTKNTECHFIAEDHFGNLVTFCIDDTPPDFVSSSMQEFAAACMEAPDPESPLVS

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