Scaffold Ga0209709_10002509

Overview

Basic Information

• Taxon OID: 3300027779
• Scaffold ID: Ga0209709_10002509
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15905
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (85.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED197 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001086	Metagenome / Metatranscriptome	782	Y
F014263	Metagenome	264	Y
F016059	Metagenome	250	Y
F024675	Metagenome	205	N
F101865	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209709_1000250928	F016059	AGGAG	MKTYKVIAGQTQYNTYEIEVEASCKEVAEEVALATPLNKWDDERSENGDSLSVDDIEEVT
Ga0209709_1000250933	F014263	GGAGG	MILDDEYITKDMLTEESYEGNNYAENNSVMYDLRNGKHNVIAFCSDDGVAKGIAEALNLLDNLEADGVALIKREV
Ga0209709_1000250939	F001086	AGGAG	MAHKITAWAIIATVERPDGTWYDETITEIDDDTASSVDTFLTEYIEEKNKERDNE
Ga0209709_1000250943	F101865	GAGG	MKIKELIKELKYYDEETDFAIKLVVDPHDSEKDILLNWVGEIDTSLLDQSYIEFGVEK
Ga0209709_1000250946	F024675	AGGAGG	MKNKYNQYTLENYFKMLTIQTGRKNPCDIMEFLEEQYFSKSKEKYVKYKDMDITHLIRVMLNASDDVENNREEVIRLQDKIKKLTKVLEG