Scaffold Ga0209709_10002244

Overview

Basic Information

• Taxon OID: 3300027779
• Scaffold ID: Ga0209709_10002244
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17066
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (92.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006643	Metagenome / Metatranscriptome	368	Y
F007946	Metagenome / Metatranscriptome	342	Y
F008525	Metagenome / Metatranscriptome	332	Y
F029246	Metagenome / Metatranscriptome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209709_1000224410	F006643	GGAG	MAEDRLRDIELRLERMHNALTRQEEELSSWRERSSRLPNWIRNGGLALFFALFAQSMTAVWWASEITNTQANMLADVKVNTEYRIASTERYNDIMIEIVKIQVMMDNHFNKDSRERYNDQ
Ga0209709_1000224423	F007946	GAG	MTTRNLIDNIKTGDAQTSNNTFNSIMHDKLINALDNHKQEVASKMYGASDDAPAVEEPAAETEVEVTGEQEADADV
Ga0209709_1000224424	F008525	AGGAG	MLTFKESFNEVVEAKLNLPKGEKVTKELTKLGKKKNVTAVITSKFNLYIDGVKLDKYKDQASAEKAVKEFIKLMGA
Ga0209709_100022448	F029246	AGGAG	MGSNLGLIGFGLVAIFATGIVKIVAFAAIGWGAWKAYKDWEAQ