Scaffold Ga0209709_10002176

Overview

Basic Information

• Taxon OID: 3300027779
• Scaffold ID: Ga0209709_10002176
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17421
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (70.59%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011406	Metagenome / Metatranscriptome	291	Y
F034216	Metagenome	175	Y
F075314	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209709_1000217615	F034216	GAG	MNNENGTMYGFFFCVILVVWCASTWGDPDLMDALIYYLSDGYYKT
Ga0209709_100021762	F075314	AGGAG	MAEENNWKEAELRRDDIKKLLENTKQLAEMYSEIIGIKKAGWENVLRSREKRAEKEKQNG
Ga0209709_100021764	F011406	GGAG	MPLVKATMFSELMGTFSTASPDPMKPGKDIAKAFANYLKMGQNAGGFPTTNVIDTPCGMTIGGVFAQQLPVGAAIGSQIATALSSMALTYLSTNQIGPPVVPPSHISPLIQLFSGPQASGMNFAKELADILDTWTKTWVVSGLIPGAPPVPFTGPLS