Scaffold Ga0209709_10002170

Overview

Basic Information

• Taxon OID: 3300027779
• Scaffold ID: Ga0209709_10002170
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17447
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (15.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006200	Metagenome / Metatranscriptome	379	Y
F015402	Metagenome / Metatranscriptome	255	Y
F051860	Metagenome / Metatranscriptome	143	Y
F057685	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209709_1000217017	F051860	N/A	MKSQIASVGGQIYLFPYLKITHTRILNGDLELIIGWLKWEWVIGI
Ga0209709_1000217020	F015402	N/A	MGRIKNMAIDLQLDASDIENELYSRNDYDYQYNEWLKTKEFVEYVNAEIDRSKPRYSESDIMTATRYASEQITIEPSEVGKKVYDMLYSEKIEEYLACKRDGI
Ga0209709_1000217021	F006200	N/A	MNKTTEDWLIELVRKYSIPSNDTEEKEKRGMLSETQLKNLSNGKN
Ga0209709_1000217023	F057685	N/A	MSKISLIDSTWTCGCGSLNAGYRKTCGGCEEREIKKNRTPKKDLLSILNLLKEDFEMLEDGRWDLAYSDGSEIQASLKNIEKAIKILKTQIHAK