Scaffold Ga0209709_10001801

Overview

Basic Information

• Taxon OID: 3300027779
• Scaffold ID: Ga0209709_10001801
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19400
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (74.36%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001048	Metagenome / Metatranscriptome	793	Y
F012279	Metagenome / Metatranscriptome	282	Y
F015261	Metagenome / Metatranscriptome	256	Y
F017326	Metagenome / Metatranscriptome	241	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209709_1000180118	F001048	GGAG	MKIVSTKQFWWRFNYLKRNGGVITVTDRTPEMDVKEYNRIESLVNKRVRWELGSENFMKWDSCGVKDIPTLAKAYGIK
Ga0209709_1000180121	F012279	GAG	MKIDRLKKIEKRVEGMLIENRLSELRDTMRTLETVETTLESLRETKWTLVKELKELGHDFSATAEGMDIVLSSSPSFNWS
Ga0209709_1000180123	F017326	GGA	MNDYEKVKIEINESITSDNFKEHLRKNYHNSYEEYESDTRHIDLDSYYEKRSIPINQLVPKGMTIKEYFGREQRLLRGENISYVKFDKDGYQ
Ga0209709_1000180130	F015261	GGA	MPVNIVWEDGDATVSILCDGCDKEYIIISKDTTGLEMCSFCGHYLEVDSETGETSEAEENSWD