Scaffold Ga0209709_10001297

Overview

Basic Information

• Taxon OID: 3300027779
• Scaffold ID: Ga0209709_10001297
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23189
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (90.62%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008210	Metagenome / Metatranscriptome	337	Y
F063590	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209709_100012972	F008210	AGGA	MAVTVNNLKLTQVQGVVSVRGTAATGTIALATTLKKSSESQNSPAVNIKGLKWTLSSGASAKVQRNSVVLYELTESGNIDMYGFSDNSEATSDIEVVIAGGAGGTVIVDCAKVSGYGSQQHQDAPLDTNDSGSVYNGGSLG
Ga0209709_1000129728	F063590	AGGAG	MIEILQEVTDWDGVNITNGIYHVNKKTGHLVQYNDKVFKSPLKQFSKSRRKFKKIGERD