Scaffold Ga0209709_10000792

Overview

Basic Information

• Taxon OID: 3300027779
• Scaffold ID: Ga0209709_10000792
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29857
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (52.38%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019751	Metagenome / Metatranscriptome	228	N
F032237	Metagenome / Metatranscriptome	180	Y
F050004	Metagenome / Metatranscriptome	146	Y
F053965	Metagenome / Metatranscriptome	140	N
F065664	Metagenome / Metatranscriptome	127	N
F082802	Metagenome	113	Y
F083376	Metagenome / Metatranscriptome	113	N
F085538	Metagenome / Metatranscriptome	111	N
F090238	Metagenome / Metatranscriptome	108	Y
F090244	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209709_1000079218	F082802	AGGAG	LTDIEIFKQVTDIATLDKAQIAKITARLPEYKRGSSIIGHSTSQSSYSLQTMQMISDSPLSRMKQCLAQIDRKYKAIQEAYYKIEKKKLTVEKLRNETSESSRLTAEEYTSQIESITMSMNTSLREIGMFQDMYDSIKKNNNIPDNWTEKDYESQEISHMVKASFRLAIQDLSATGRVGKAVVEYWEQLGIHPQLAEARTRTYLVLIQEKINSSEKVTIRDMYEFLDKMADEFKDAYQDALSRMGLDELGSEEFMANGATKPQ
Ga0209709_1000079230	F085538	N/A	MLTSETIFKVGVGINYFDDPQGLIKIFINDIVYDYVDKFYVIDGIYAGRNDKQKSDSDYLKDLKNIYSKIHIVDMNNKTQIQKRNKYWELAKKDKMDYMIICDSDEYMDIKPDRLNNSLRTIQDRPEKCYPVMQHMVGITTMSRPRLFKGPYTYKHKQSEKENTISHGSLYDKDDTEIINQMYAWFKDHPKRQINSDNQSGVDGIEMWHDKEFRTKERIIADRVYYDDTPNR
Ga0209709_1000079233	F090244	N/A	MDVEARIFEKLDKIEARINDLCIRLSAMEAEYNSHIGNLQSQQDRKLKRRDYTLVIMALGLTTVEVLRTLGVI
Ga0209709_1000079236	F083376	AGG	MIRIYTDKQTDNVIESLDLGRVSLGETIKYTMFMKNTDTQWPVHNIKIENANPELRFDIPDMLKANEVKEVFVYWTPKLDSREPLLTKFEFSGDVFIG
Ga0209709_1000079238	F050004	N/A	MVLYLKMDQKTWGQGDFTDSATYDLSGTVYDENTLTTARNISGFTGTLRLIDQDGDSVFSTTENLTLGSDGTILIKFAEGKTPTSQGIFKVRLRLEVSGTRLTCIGINGSDEVYFEHD
Ga0209709_100007924	F032237	N/A	MSDEKNFIDKTTSLKTIERVKFSLKNFSKGSKIEISWAFNPEDSMHVDQFLELDPGKNNILTALQGFKLMCETTLGVKILTDEE
Ga0209709_1000079241	F019751	GGAG	MTRTRGPDLSKEFHEYISTQWMFFGRNAYQIAEQINKDTILMSKFGKCSHAGVHYHIKQIEQEMENTISEDAMDTYIGEFIRARLGFEQDVIALEEIMADEKSKGFDDMDKELYLKFARTRHDIKLDSFKMLQDSALPLQVKKLKMERAKLRPARPMPEVEDNGVSK
Ga0209709_1000079242	F065664	N/A	KVLQLEQFDTMGFHEYYGVTELFKDLQSLIKRAEYIQTNYDKIVIHDYSEFKLNFPKSKVVLVFHGSKLRGLNEKELETVKDYPCYVTTSDLFDILPFAKHLPAPVDSDLFKKDVEGYGWIAINRPYQRDLIEKRIKARYPDVQYYERNAGNIIRYEDMPDFLSQYKHYVDWKFTTDTIPLSLPDPSCTGIQALALGLTVHDKDGGTLSTNLLLIHDAKRITERFINEIT
Ga0209709_100007927	F090238	GAGG	MHFHVEENEDALGEYYTHDGSIEIWLGGHLTIWGLFDTLVHEALHQAIEESVENTTEKQDHWAIQRLCF
Ga0209709_100007929	F053965	GGAGG	MGKLADAIKEYKISPINSPQERAAKEIITQITESQWWETQVGTKFKWPKKYDNKKRIFGFTEPQFIHFGNHIIPRWEFCSRCGLHTHGLLTNNKSKILYV