Scaffold Ga0209709_10000708

Overview

Basic Information

• Taxon OID: 3300027779
• Scaffold ID: Ga0209709_10000708
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31406
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (75.41%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001242	Metagenome / Metatranscriptome	739	Y
F034719	Metagenome	174	Y
F049227	Metagenome	147	Y
F052201	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209709_1000070822	F049227	AGGA	MQREGYWDYMGRKLQEDMSKMTPIQHDMAGLTESHYTVLKRLKEVSDQNLLLIKKIKRLGGNPNQLELDV
Ga0209709_1000070826	F034719	AGGA	MENVTHRVSDKVWDYDAIDAQRNEEWNGIHKLITDHAVEKRVTAEEIAKRNSIFYNHREINKYGDIFGRG
Ga0209709_1000070855	F001242	GGA	MGKIITLKGLTNHGKNRIREHGDKWEVMETTLTPKPPLPPVKSLKTGETRWLDEINFEFRLESKT
Ga0209709_1000070859	F052201	AGGA	MSKMKNFMMDMEELVDCAVIKGAENFKEVATFVLDNYKPMSFVDVEYCKKYYEKEMS