Scaffold Ga0209709_10000690

Overview

Basic Information

• Taxon OID: 3300027779
• Scaffold ID: Ga0209709_10000690
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32014
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (73.58%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004418	Metagenome / Metatranscriptome	439	Y
F007004	Metagenome / Metatranscriptome	360	Y
F010942	Metagenome / Metatranscriptome	297	Y
F013228	Metagenome / Metatranscriptome	273	Y
F101352	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209709_1000069032	F013228	AGGAG	MAIGVTTDGESLKTNVSVKSGRKKLYDNQALVVEAFKEKYIKVDLVDEEDHHFKLNWDGEKYEGNFFGTTLTCEYDVIRDFKADISAPERNESGPTVYAKRSNGGRPNRYQV
Ga0209709_1000069039	F004418	N/A	MKKWLIDDWKNNRFRLFCETIGSLCFISIMLMMAWYGDTVSILTVFLVQIVGSSLHIINGYMRSSVSLIVLNVVVIAIAIFGIGRMFL
Ga0209709_1000069049	F010942	GGA	MSDSQSRESEKQIVSLQKDIEHLTYVVDELEKECMFVKEHFTTKNSERVNDLKETHERIDSHQKIDLEFHENVRKKISLKFDILDCRIRKIERWKWAVWGGLVVFGCMIGYFVPGVKGPGLSLL
Ga0209709_1000069050	F007004	GGAG	MKNILIGISLLLFVGCANSNAYERPTVRIVGEAQMTKLPNGNYEVTPRWIKDRFNAENSMVKQLEDCRENK
Ga0209709_1000069053	F101352	N/A	DVDAINALMEESVDAVAPNITPDSQFAGVDVFNVNDSSYNDCKFGKKKHERWSKYVDVDSDAGKRIYGYAKKNPNKSIIVQHDKTGHMLYLKKYDMGGES