Scaffold Ga0209709_10000231

Overview

Basic Information

• Taxon OID: 3300027779
• Scaffold ID: Ga0209709_10000231
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 54129
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (75.81%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017910	Metagenome / Metatranscriptome	238	Y
F051054	Metagenome / Metatranscriptome	144	N
F098024	Metagenome	104	Y
F100510	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209709_1000023116	F098024	GAGG	VKPDKVEMVFDIIITSLKLGAGCILLYVMYQFTQGMGAWVELDRITR
Ga0209709_100002312	F100510	GAG	MDYPTDFNKKRPGPWDDETFELAEDVFATWNKENVKWYNKYFIVPFERFIHAIEDFPSEAKWFYQRGSRGWSDRSAWSIDTWLVDNLIPMLERLKNNKQGTPSTMFRQKDGVDKDGNPTDEASALAEQRWENVLGEIIYGLKCAKTIQNYDYEDKEDVKKLTKSSQRSFELIGKHLFNLW
Ga0209709_100002314	F051054	AGGA	MKSIKLTTFNDIGDCDRQDVNDLISALVRMGYEVWMTDDSVCFNLGNDDVIKDEKDLNKKSEKST
Ga0209709_1000023157	F017910	GAGG	MSVTTISEDGKEYDDTFVTSIDSINILKEMLADDKTCDENGKLTEYGNKKLKRLQKKWCRENQHKNYNNEDYQK