Scaffold Ga0209709

Basic Information
Taxon OID	3300027779 Open in IMG/M
Scaffold ID	Ga0209709_10000189 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027779 Open in IMG/M

Scaffold ID

Ga0209709_10000189 Open in IMG/M

Source Dataset Name

Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	60560
Total Scaffold Genes	77 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	48 (62.34%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

60560

Total Scaffold Genes

77 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

48 (62.34%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	75.235	Long. (^o)	-150.0691	Alt. (m)	Depth (m)	79
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Arctic Ocean: Canada Basin

Coordinates

Lat. (^o)

75.235

Long. (^o)

-150.0691

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F022909	Metagenome / Metatranscriptome	212	Y
F033111	Metagenome / Metatranscriptome	178	N
F034245	Metagenome / Metatranscriptome	175	N
F089156	Metagenome	109	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209709_1000018956	F089156	N/A	MLLIQFNTSIDISTFPVEIIQTFKHDTYLIDLNLTDYSTINHITSNYDILSMQSNADMPYIDVYEAHTTSYTNVTTEDTLAPLIEKLDLLSMTEPHIVCFSWTTDRNYILDYRVKKLLEAGFLIVCGGGNADLPITDVSPVAVDGVIRVGGNKYNGHYHNWIDIYDVTVPDVTNTHEAAHIVCELMINKNLELDYSLGFYSESTIRSAPWPLRLAQTPNTAIKYYEFLPVSNLRYFSGEHLLPVREGDTVSVLYGGVPLEDFTSPGNIELGTALPRGCTFNTQSGWLYGTFKFKVPMFHRFLADINGQLFEYHIISADADTKPDFEECKQKYLNQPYDAPPFTIREYWVPMARPIKLLEPGDPFIRTFNLNDLHLYRSYE
Ga0209709_1000018957	F034245	AGGAG	MRGVTFSEFGGGQNVEMFLHAPTQLPSTPMQEAVKTAITIREKYTKDLYVWCDYSVQHIYSQVAMQAFIMADIPFVAAIPVLSNDLTKRENDCTIAYCEQRNIPYELFHIDVPTFFDSEEFELHGETFPTTQPQMTIVGKFFSMLPDCCVVYPGFMMHISNSDWTRTKNNGFMPFVPHVTQEHAAEHHGLEYTNFQEHYVDMYTSWMFTQSYGEVLKSSTQEFVDNAPHRYYQYEMRTIKQAGFDIKPTTNKLIGIERLKSHFGHDKYDRELRQRLVPFSPLTLKYASLQYTVKVDTNLKEMLQAYHETNFEFLNKLF
Ga0209709_1000018960	F022909	GGA	MDDKPNKEILRTFFDGKIGCIKYSKKWLPQLEEFCRVAKDLGYVNNESPEAMKVDEIQYHCMIHIPTSKIYAVAGVQYMPEYKEGYYRIWTRLSRIPMEDIPMTRMTRYGRGEMPEFDGLLYFNCDWAWKQSNCKATFGTTLANKAYADDYVRSANTITDYVAKNWWKRKGIATPEGITEFYRVPQVVWNMHFDKFKELS
Ga0209709_1000018968	F033111	AGGA	MRNELPYYFEVPEMPKIPFDVSQYYIPDEDRLVAQEDKKNLDDIQGVKSRSQSANWYQSYMNVEENSRGQNKRDFKEVNLYEEVDFELTKLMKEFLGDTLHLRFNSILMLRTPANCNSRWHCEGPVFHTRQCALNFPVYGDAEVMEGQWATFPRFKDIPARENEKMGFVTKTDMENTEILCKWDKPSMPAFYNTMIFHRGMNEHSNIDRVVLSCAVEDFSDINVVHRKYSTGKLFK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209709_10000189

Overview

Ecosystem & Geography

Associated Families

Sequences