NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209709_10000183

Scaffold Ga0209709_10000183


Overview

Basic Information
Taxon OID3300027779 Open in IMG/M
Scaffold IDGa0209709_10000183 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)61173
Total Scaffold Genes97 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)79 (81.44%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)79
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008340Metagenome / Metatranscriptome335Y
F043416Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0209709_1000018334F008340AGGMAFIKHFTRMITREELSDEDVIEYFDIVQSVVATKLLTAYDQEKEQVGIEVISYEDEDKEGALFIYEIVLDEMILPTEGDEISTILFDEFEDITFSFEASIEI
Ga0209709_1000018385F043416GGAGMFAKLRDWLDICKTHWKEIFALSFALHFVMDLFIIGPLFFLLGYFFGINVEAH

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