Scaffold Ga0209709

Basic Information
Taxon OID	3300027779 Open in IMG/M
Scaffold ID	Ga0209709_10000100 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027779 Open in IMG/M

Scaffold ID

Ga0209709_10000100 Open in IMG/M

Source Dataset Name

Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	77679
Total Scaffold Genes	108 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	39 (36.11%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

77679

Total Scaffold Genes

108 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

39 (36.11%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	75.235	Long. (^o)	-150.0691	Alt. (m)	Depth (m)	79
Location on Map

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Source Dataset Sampling Location

Location Name

Arctic Ocean: Canada Basin

Coordinates

Lat. (^o)

75.235

Long. (^o)

-150.0691

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006483	Metagenome / Metatranscriptome	372	Y
F007550	Metagenome / Metatranscriptome	349	Y
F011494	Metagenome / Metatranscriptome	290	Y
F015789	Metagenome	252	Y
F020463	Metagenome / Metatranscriptome	224	Y
F089413	Metagenome	109	N
F090490	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209709_1000010015	F090490	N/A	MAHLITVTDLNDHELLFNLDTVVSMERGNGGNTIVTTRWSRTDIKETLEEVKDLAQKSSLEYQRIKNHAKD
Ga0209709_1000010018	F007550	N/A	MKKIITFLLACTVSVNAASLELKVKQQKVLPNGNAYGLESGIYFELTNLEPFIMYKLQYSEDLNRWTDLVHLGTYKMAMTSPYWTWDELPPHQCFFRIVIAW
Ga0209709_1000010022	F020463	AGG	MYITLSQTPDRDGFQGQVALNTNRINGFREVSYKDIGGNSQKDDAGYVGTYTEVLMKGATVLVADPIATILTKIEESKN
Ga0209709_1000010045	F006483	GAG	MRYINSNCTYTENHVEGTYTFTGPCRVTGDDYSVTIPGHELWDLNQGKPIMCLKSLDASDREFVLSGTSPKGWEKLFGGVEEIAKSLVAE
Ga0209709_1000010060	F011494	N/A	VTLLIDISPFCGILFSVMRKYSVVDGEGVVQSFTQNVGDADHTALNAAIRLADQVGEDVIEHHTDNSREVVWSIDDAAGEDWDGFNSDAEADGDALASAGWGTDEDYGGGCEML
Ga0209709_1000010067	F089413	N/A	MLFAVMRDTTQKSLRNEGIAIAEVRGALQILAQTNLIGKEAIQIRIEHWEEKLADVQNRLTEIENSEDLEWIEDKAGIEA
Ga0209709_1000010071	F015789	N/A	VRGDPPTERQIMEDKKIKTVKVKGPWVDGVQTVKEISLDEWTSYTPLNRRVRGEWFRVVK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209709_10000100

Overview

Ecosystem & Geography

Associated Families

Sequences