Scaffold Ga0209709_10000089

Overview

Basic Information

• Taxon OID: 3300027779
• Scaffold ID: Ga0209709_10000089
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 81951
• Total Scaffold Genes: 117
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 79 (67.52%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040326	Metagenome / Metatranscriptome	162	Y
F042008	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209709_10000089116	F042008	AGGA	MATQNKFVIEYGLKVGTSDVIDSAGKLAAAAITNLDSDDLSEGSTNLYYANSKVGTYLADSGQAKTIANAAIDGGTI
Ga0209709_1000008983	F040326	N/A	MYEVTIVGNGPSRLGCDLSNITHEVWGCNAIFRDTKDCDIVFAVDMPMQKEIVESGYYRGNLVAFADIEPLDIMMMELMKPGFEYTHSVNVSVKDDDTHFIIQGNATETDFLGLVNPHLIVTYNDTMLRNLLTGMSALGFAMLQGYERINLIGFDGLEHLGEPANIYEGSINYPTKYTTEDSVLSVQRSQFIALLEWYYGKGSIYWQNPLDKEDEIKYNELSYYEISEEWILGQGLKSLI