NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209829_10253268

Scaffold Ga0209829_10253268


Overview

Basic Information
Taxon OID3300027777 Open in IMG/M
Scaffold IDGa0209829_10253268 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_140205_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)739
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003803Metagenome467Y
F029676Metagenome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0209829_102532681F029676AGGAMSHKNKTFFSYMTEQDARHEYLELIKDDEHFAEQWKDTQDDFNDWCESYDIVLVDTK
Ga0209829_102532683F003803AGGGGGMTKNKTLLRFRIYDGDREYTDYAIIDSEQLLTLNHKEIISNFFYDDNVDDEQFLSDGRAVRIESEIPITDIDAKKLESLHIAFLHDFKIKEVA

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