Scaffold Ga0209829_10041227

Overview

Basic Information

• Taxon OID: 3300027777
• Scaffold ID: Ga0209829_10041227
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_140205_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2509
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F040590	Metagenome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209829_100412272	F001915	AGGAG	MEWKLAHPIHDVDDIVYLGRILLDMEGSCLHTDPYVFRQHLTVATTNQIFDPAKEFIAVAREGDKLLGYCWFDRGGYTTYSREEISNAKFHHVDLELPVKTRVRLINGMIDQHILWCYKYGIPVICSTSIRSDYDGFMKIHKKRGFTVNGSYSWGRTEDLIKELQCKNQ
Ga0209829_100412276	F040590	GAGG	MYGKVISGGAPMTRGVTKGINEKLEEFAESHKRSKTLADAVGKAFNQNPLSDPHLNNINVKASKKFTTPKLPTIF
Ga0209829_100412277	F001059	AGG	MATYDIEALKSDLPTAKELAQFVYDKTRIALDLIGKPKEDQYQVAKNALEGKKIPSDYQTDLNPYIDRKELIPVDEMKQLPARSTDLPAENTHVHLFGATNMPHPIDPQSDKKVQIVFKKYDNGIITFQVMGPVEQLAVGKRMNKYGQEQPEKYSWVDPRTSEEMLRRADGTYTEKGRGLYAYCVGEKGGGIWPLIDREMLSTIQKNITNPW