Scaffold Ga0209829_10022875

Overview

Basic Information

• Taxon OID: 3300027777
• Scaffold ID: Ga0209829_10022875
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_140205_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3648
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005737	Metagenome	391	Y
F035727	Metagenome	171	Y
F066703	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209829_100228751	F035727	GGAG	MNHEHRQVANSILSRLKDGEEFSQSVIRTALTDTGDLASIGNEGLDQAVQEEDQRGGQNRSMGMVAENLI
Ga0209829_100228753	F066703	GGAGG	MAITKFTNQKDESFDDTQRLMCSVPGCSSRWSVKSDGDKPKCSNHQWQRIEKKPVFQSWHDVGEQF
Ga0209829_100228757	F005737	AGGA	MFDIETYKKPTDWAQIALYAVSIAAIVVVALDLFVWRASC