Basic Information | |
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Taxon OID | 3300027777 Open in IMG/M |
Scaffold ID | Ga0209829_10019324 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_140205_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4051 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (91.67%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Croche, Canada | |||||||
Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F017969 | Metagenome | 237 | Y |
F027776 | Metagenome | 193 | Y |
F051705 | Metagenome | 143 | N |
F056414 | Metagenome | 137 | Y |
F079788 | Metagenome | 115 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209829_100193243 | F056414 | AGGAG | MKLTDYQRSQLKAAAVFGGDQIDKVAASLQRENPEAFWRDNELSQRNFFHEPMSYRSPVPHRSYVHRLVVRRREQDNERDQVMAQNHYLAYTHQIGVGA |
Ga0209829_100193244 | F027776 | AGG | MVVRMMNPLQVEIAKTVFAHLPAVGNVGLISREELATMLHTACTDAALAGWARGAETAQKRLDQEMEILRQELKSIQTELAYAKAN |
Ga0209829_100193245 | F079788 | GGAG | MDTDDEIESWATIALGLIASIFFFIGLMAVVAAACMAWGYYTYEPICGTVAALFTSECKL |
Ga0209829_100193246 | F017969 | GGAG | MISMIYIPVLFVCMNGNCEFMQALTSYKSEQQCRASVEVQKENLQKMALKGGQMVTLIEGTCITLKGGML |
Ga0209829_100193249 | F051705 | GAGG | MQITATFQDEQEAIKAIHSHHAWQTLYEINQVLRSNRKHGLPFEQTVSEIQASVNDALALIPDY |
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