Scaffold Ga0209829

Basic Information
Taxon OID	3300027777 Open in IMG/M
Scaffold ID	Ga0209829_10010589 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_140205_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027777 Open in IMG/M

Scaffold ID

Ga0209829_10010589 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_140205_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5825
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (58.33%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

5825

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (58.33%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005584	Metagenome	395	Y
F006138	Metagenome / Metatranscriptome	380	Y
F008741	Metagenome	328	Y
F029043	Metagenome	189	Y
F079581	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209829_1001058910	F008741	GGA	MSAKTIKYSQRLGDVLRCLPAAKFLADQGHEVFFDCLPQYHSVFDLVSYVKAGSKGDIIDLEVWPNKYEEYRKSKKTWTDFVYSHSEIKGADKTNIVLDKLDDKPSKELPENYNLVAPFGISQGHRNNPLEIITKARAEMGKENFYVMTPPDIKIQGLSTYIAPDIEDMAKAIRGADMFWAINSSPIILASAIRKDKNTGFFPQKNEWETDNIFDFEGMIKLD
Ga0209829_100105892	F006138	GAG	MPAATIGTSGLVFGTVSEGSIGLVQSFSEARSVEKNEVKNNAGDIVAVGYFNPTTAYSLSVALIGAYNVTAGAALSALANATTLGTTRIDSITLNKSNDAFVTLDISATGYPNVT
Ga0209829_100105894	F029043	N/A	MSKDEQAIKALQYLLDEGFISLGYIDGQPSVFLTTSLADAQKAILGLSKDSADWWK
Ga0209829_100105897	F079581	GAG	MNQTPQYNVEDAIGDLLAGISGLNVYTTNRTGFRLFPFVTISASVNSQMLGNYTGVYDLSVAVNYSDTAAKITQEDFDAEYCSIFEAFYSQTPTLVTKIQNTILDTKIHMARISGQSPSIRANKRAWQRGLTMSVICTPSEVEDGIRYLDFSEALNSMYIGLI
Ga0209829_100105899	F005584	AGGGGG	MAGSIDTTYFLSDLSGMIKDLYSSVTGLGSNAVCASVTDLTTATDLDIGGEILRITQSLVVPASSISAPTIGMLCSVSGTERMVAGFSQSTDGVSYTIELADITT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209829_10010589

Overview

Ecosystem & Geography

Associated Families

Sequences