Scaffold Ga0209829_10007042

Overview

Basic Information

• Taxon OID: 3300027777
• Scaffold ID: Ga0209829_10007042
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_140205_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7458
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (62.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007166	Metagenome / Metatranscriptome	356	Y
F007848	Metagenome	343	Y
F014955	Metagenome	258	Y
F017107	Metagenome	242	Y
F029048	Metagenome / Metatranscriptome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209829_1000704212	F007166	GGA	MGELNQLMLEMEERLEIALNNMEFGTELDQDDVDVIRAACGKPTRNTLLQDVFDDFGNIFGGNHA
Ga0209829_1000704216	F029048	N/A	MDMLSQIKDVIGDKARISTEPFGVDEERQLIAFEVNDLAAVLQDVIRVCADCCLNTTDREAILELLN
Ga0209829_100070423	F017107	N/A	MTDYSENYLRIQQLLKCYHKATLKKQYEKATLIANDLAEETIKLEFSTYDQVRKQWLA
Ga0209829_100070425	F014955	GGA	MDIEKYIVAATGLGYLVVGLAQYFKGSPSNAFIWLGYAAAQIGLWMNLK
Ga0209829_100070428	F007848	GGA	MKDILGACLLGVVFAAMFVYGIPAKAQTYPMTNAQGYNMGTVQINGNTAQFVNPQGYTTQTATIYPNQVVITTPNGYTQSVVGNTGYTVPSSPPTPMSPRVMQ