Scaffold Ga0209829_10004204

Overview

Basic Information

• Taxon OID: 3300027777
• Scaffold ID: Ga0209829_10004204
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_140205_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10241
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y
F005087	Metagenome / Metatranscriptome	412	Y
F006264	Metagenome / Metatranscriptome	377	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209829_1000420410	F004695	N/A	MLDRQNVIVEYIEAPAGNKGIVFQVAHETYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGKVNFEFERFSEMDSEQADQATEMVKYMINSKNDSYQVIRDWAQDSLLHKNGIVMVAPLREAITQYKEVEGTKDQLRVFETLAADKGLTTKRQEMRRIDVDLQGVLQETLAEGSPEDAINSNTVYRAKYKLTGYSTTVKIKHVAQHYFVCNPTISNIQDQDFVGFYDPMTIHECASQFPFVDIEKLSQHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADKYSRVIMLTTAWLRKDVDGDGEEEIVEVCFSGSYVLYVKEVDFIPLASMCPKPITGNFFGYSLAERLVPMQEYATSIARAEMAFAMQASTPRVGVNPEFIDAEEIQRGVSAMFILDRKFDPNKHIFEFQPMQGNLAYVQSSMERFESDKMAMIGMTSPNDVLNPEVMKDGNSGYKLQLAMGPNQLIQDEMVKNCAIGLRHVIYITWKTLIQYADDFNIQQLAGICKKGQPFMDAKSVENFEFIDRKIINIDLALGFLSEENRLTRQQLITQTQTAFAQAMMQLDPSIPELFLKARRPFEDTLRVLNVKDVDAYLPTMEEAAKIAQAKAQQGPNPDQQETQSKVAMNNAKTQETLANTGLIKKKIEDIDVDNMFTAMAAKNKKLSAVEMD
Ga0209829_1000420412	F006264	N/A	MSEDYSVIFRQKLSGQAEVCARKALEWLQKDLQGEHLLNAEDIFYLASAAQVLLTMRDVYGKK
Ga0209829_100042044	F005087	AGG	MAALFIQSANSLVSRVAQWVGAIPTSLSITVSSISGNTLTTSADPSSLILPGDFIGPSTMLPYTVVLAVSSTTITVSDPDDVWANLSYPATILKLPSQSSMEILSSIQLAEMKMRTIELPALRSDPFHPTSPSVLVTDSQGMAEIPTDMNWPILFFQDSAPSSQPPGATALGPWIIYDRVGDREIIRRRMIDQLYIRPFGVPRVIRASFSEVGTQYVFTPNPGENVNIKAYYQRTFDFLFSATGDALQPIVQINDVLSSFPEGYLYSTLAAYYDKNKNVEESQKWEARFDAVYGVIEDQNFRGKWRGGDQHLTSEFQPRQYRYSFR
Ga0209829_100042045	F000857	AGGA	MELNLNNEEAKVNESYYTSGILEAGIDGVFRHNDKLFNEVKSGTWSQTFSTPNIDYKVGAIDGTRYVQYDQKNVEAIRTKCKEMREFYKEHGTGNPFFAGTFHAMELPKCFAHEISSKYFSNRPWELIKQVKKDKILFYAIVNEYYSDFVCHPSGKIPLPYNPAIPTK
Ga0209829_100042049	F003521	GGA	MKSMVLRIREYFNKRTKVVDSHKEANAERRTLVIENGECANRLMANEDFALMFNLYRFNILERLEDSKDDQERISNAHYVAGVRDFIDFIEKQEFLGKVAKKTNT