Scaffold Ga0209829_10004037

Overview

Basic Information

• Taxon OID: 3300027777
• Scaffold ID: Ga0209829_10004037
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_140205_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10456
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (60.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012113	Metagenome / Metatranscriptome	283	Y
F019102	Metagenome	231	Y
F025225	Metagenome	202	Y
F041645	Metagenome	159	Y
F049401	Metagenome	146	N
F074409	Metagenome	119	N
F086801	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209829_1000403710	F049401	AGGA	MQKLNIAVGFVMLTLILGGVLVLSSCASTSYNYTAPAPADIPALIMEWDKLERSLGQVKPEFREQYAKALKALSNAIAEEERWRSRAENK
Ga0209829_1000403712	F086801	N/A	MTGVKVVASNEFTEKHAYHLSQIQLATIEAIETKYRSGQAEHGASGPLWAMPTISLTENAIAESVDMISYLMTLRGQIKIIYELARLGMEDSDLCATTARDSCRRIFETMGGTKK
Ga0209829_1000403716	F074409	N/A	MKSPLPARPVACPVSVYRKEYAKRINQPKANGWRFLFDQATGLVTNRHGVKAKNAELVLERLKGIEIKARYIDGEIMGMRTRSAKGTIILIDAFDPANPLPISERLKLIEEIEPASYEVKANALLRMPRLNHEKLKACWAEMEYQNQKAGEVLWEGFVSKDDQKYPFITNPSYCSPEWHKMRIRW
Ga0209829_100040372	F019102	AGG	MNISLDEELNSAFIAPSKEYMGEPLANYTEGSRLLLMQVRDDADSSVYFIWSFIFIHIQLFKNRKEATKLAWDRDLFREKLFEYIDGKTEEDRAVAMKIVSSMIDEASKGRVDIIATPHQGESGND
Ga0209829_100040373	F025225	N/A	MLTIDLLNQTKFLHKLQQYQSVSRKNMADVINNKLGDVAVTAIGTTYRSNSAQIASELEHIVSSIKTKGIYKPIGIGKNGKIIKRKIGETRKFSARNESYAGTYKLVNWLLKNRGLATLGKTKIGVGGLGMGGKPTTIGHLARRLVAGRKRSVNYIRNGWAAAAYLFGKKAALTRGDYSKQAIMRLGGGKKADDKKALMEGIIFNRAGDKDTRFYPVRKRAVSGAVKIGGPGLAEAVQRVMQDMNVYLARQNKKTSDKLGL
Ga0209829_100040375	F041645	GGA	METIIGSAINTKVLKRQNFNKEPNGLETLIEAYAIKTSNRVSVVPEKNTLHSAFSSASTTYPRMAVESVATEEEDGGITSMLVTYVGLTSLTGLPPAIVRLLPTAGAGIYGPPMVIEVEFVTDVTEAQFSSGQQASTNPLQVAGWTKFIPMPASINGTILPTNPRSPFNNNGAVIERYYGYCSDSFACERRGIFLVAKNIYAEKQQIATIS
Ga0209829_100040379	F012113	N/A	MQQILTFIQSQDIFAWVGALVALLSAVIAIASLIPGDQPEKFLQSVVDVLSKFSKK