Scaffold Ga0209829_10003084

Overview

Basic Information

• Taxon OID: 3300027777
• Scaffold ID: Ga0209829_10003084
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_140205_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12299
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (31.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012017	Metagenome / Metatranscriptome	284	N
F022191	Metagenome	215	N
F050991	Metagenome / Metatranscriptome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209829_100030842	F022191	GAG	MSTLPALGNRLRNGLMVLLRKLMAKGVKVDGKHGKATYSPQRLINSVAIATLDGRGLGLKKHPSLGDVTVDDRRVLQRIVGITVEEFNQRLIGKLDTLADKIVDRMLETVDDTPLQTLGFNLAVAIDKRQRIAGLNATQGANVNIQVNNYGSLSKEEIVARLSGKTGVPTIQSAPVDIGNCNDIDAKISKKTGAVKD
Ga0209829_100030844	F012017	AGG	MDIKRILIGTPLKGDIPKSYFRTSLVMASANIPNVKLDWILLDGPAVQIARNEIAAYAIENNFDEVIFWDKDVLAQRNGVDVTDSALMRLIGHDKDIVTSVYASRSLDTHWHVTPLPGEVANEEGLQKVERASIGFSKIKVSVFKAIAHDNPDRVAMLLDPNRAPRSIPELFPMELQGRNIPSYRLQQIKNAMTDCKNDDKLRMRIERELSVRYDEPNAYLSEDYGFCKLARESGYDIWMDTLMVLGHDSRVTLPIETPKLMEMLSEPWRKEELAVIKTQLIEQNQKAKEKNNNLRN
Ga0209829_100030848	F050991	N/A	MKKRRDPHQSSTEKFANLRHTMFGLVGNDNFQNFIEELREMQHSTMIDLCSDAVVQNDRMTLASTGELRAYSQIIALYDDFVQQQLLQAETNAEDRGA