NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209829_10003067

Scaffold Ga0209829_10003067


Overview

Basic Information
Taxon OID3300027777 Open in IMG/M
Scaffold IDGa0209829_10003067 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_140205_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12339
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (70.97%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021295Metagenome219N
F050978Metagenome144Y
F066722Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0209829_100030672F066722GGAMEAGNTKTRFDMEQEIMTAWQVLDDIKMLSTRESTTKEDWDAVTRLYQIRFETLFETFEQLIKDRVIL
Ga0209829_1000306726F021295GAGMQDFEDDPIYNYAKNVMFQIMTVLYINGRTEAHVGAIMRLLGVDEDHARLHDDERIELDENFARMAAELNMTELVSAQIPQGTTIH
Ga0209829_100030678F050978N/AMRYCLNYAMDTVNYVRINCGSQQALALKHQLDVDGLVVNQDYTWRYQKPVYDEFAWTDSEVSSVTFTFKQASMATFYQLKWAK

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