Scaffold Ga0209829_10001989

Overview

Basic Information

• Taxon OID: 3300027777
• Scaffold ID: Ga0209829_10001989
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_140205_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15927
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (81.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009741	Metagenome / Metatranscriptome	313	Y
F014843	Metagenome / Metatranscriptome	259	Y
F019092	Metagenome / Metatranscriptome	231	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209829_1000198915	F009741	AGG	MTQYVDGRYDHTKPWAQFRAPINPDAVAKKYSYYGPWATNQERLTSQALMVMNVPGADIQAMVRPPLPQIQLFPARYGYGDRSQPGIDDIVTIDRNYTEPRVSWFSGGVSGYQAAERNALGST
Ga0209829_100019892	F014843	AGGA	MNILVSLDGVLSSDSGEPIRAGVMLYYALNINNRVAIMTSRKTEDAEHWLQSHGIINYDELIDTSYRLEGEDLKKRQFILSRSKAPIELYVDSDPSMCAWVFEEQGIPAIMFMNPGYLAVERRPDAPSKVRKWTDIENAIDRVNVAKSKDAANPKSLEFWQD
Ga0209829_100019896	F019092	AGGAG	MSNVPILGEKPKEQELMFRLLFCLVCQTLEELPPYDGDPELDTLLQIACENHIFPSGEPHKGKLFVLPVRAWAHTASKKEIIIQIKGGGSKGLAEIDDTFYESRSIFLEDAMSCYKAHNKPKQGCSDWHIEKKMLIPKTEKERRAEGMEKYKDSPGQKTYLCDFCPVAVGVAQRKQQLMGMI