Scaffold Ga0209829_10000912

Overview

Basic Information

• Taxon OID: 3300027777
• Scaffold ID: Ga0209829_10000912
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_140205_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25139
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057200	Metagenome	136	Y
F070990	Metagenome / Metatranscriptome	122	N
F090370	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209829_1000091212	F070990	GAG	MKLIWDAPQELKTDRKFEEIILPKGVYTFTITKAEFAPDKYKVNEHNKDGMSLKLWLDTEFQGNNKRIFATIGVHEPHIINTVVIACNLPPLKRGGSLNEQSLMDVRVMASIEQYTSKVGKVSNIVKAYLPAHPAAVTKHADPVPVDDTEIPF
Ga0209829_1000091216	F090370	N/A	MTHADTILRIAVRVAALGSERDAARLREVVVWIVEWEVKVREFEAVEARLRQCEGERDHIRHLEFCLRPRLTRNQDPKERKLK
Ga0209829_100009124	F057200	N/A	MAPPKKPSLTPLQTTVLCGQLISILIALGLYVSSLGEKNAVLTRIAEDTKQLTVTAAELTKAVIHGQAIDEKHTEAIAALALKIDRMNSK