Scaffold Ga0209829_10000757

Overview

Basic Information

• Taxon OID: 3300027777
• Scaffold ID: Ga0209829_10000757
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_140205_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28149
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (19.05%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004366	Metagenome / Metatranscriptome	441	Y
F013294	Metagenome / Metatranscriptome	272	N
F016965	Metagenome / Metatranscriptome	243	Y
F033725	Metagenome / Metatranscriptome	176	Y
F035679	Metagenome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209829_1000075723	F035679	N/A	MKYLLPLLLVLLACSPAKRAQYHYNKALKNGLKVIQDSDTIRITSIDSIPVIRFDSIVYEKFFTTKDTVIHFNNIYVPKTRFQTRIEYKERVKTIKLQGQTKWKTAKATQIVKYKINWWIVLISFIVGILVRFLVQKGIIDRIVLAYKSL
Ga0209829_1000075732	F033725	N/A	LFKLQIMITILNREIPNQIDELTIEQFEAITEINNSQELDPIDKHLQVFAYLGIPESEFWDYDVADFVTIVKEFNSMDQKDFPIVEELELGGYVYKAQMKLTVRDTKMIEKVALTKPKGYISEMLAIMFKREDLTPTEHYADAHIKQKAKLIKKLSADISIPYIMFIANKIGQQVKNDTTTQAMEPSNA
Ga0209829_1000075735	F016965	N/A	MSLNMLNTFTYNEIEYTITGPIEVISDTQLHVPTDKGIILVDDTMDIYKELTNG
Ga0209829_1000075737	F004366	GAG	MNSLQAITNHIELFYTNHLQVKKVGSDFKEQLYNFATQDEKYPIVYIVPVGVTPTENTSEFNFDIYCFDIIQKDRANIITILSDTQQILNDLYVYYMTSNDYSFDVVGMPTFQALNNDLLDYAAGYLMNITLTVNDWTDCSVPLQ
Ga0209829_100007575	F013294	N/A	MKKLLDRYISNHYDEVRAYTIYFLNKMSSNIEADTVINNSYLHVLTINEDTTSEDKVKSFLLNTIKYQILWNTSLSHKHDRLNSMEYEPSEQLDDEDDLKHKIQDDLIYSTQKGIIEIYRNDIIDNVHKIVFEAYIDKGYTTARSMAKYFDIPVTSAHYLIREIKQNLRKIQYRYETISN