Scaffold Ga0209829_10000729

Overview

Basic Information

• Taxon OID: 3300027777
• Scaffold ID: Ga0209829_10000729
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_140205_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28751
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (24.39%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005050	Metagenome / Metatranscriptome	413	Y
F028725	Metagenome	190	Y
F061497	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209829_100007294	F005050	N/A	MGCASYCESGLEIHDLVVCGEYKLGGVSAIIIGSCASVLADPTDAAEITAALDAGTAVMVEDIRFALPAGSPIQVDSPVGCGTQIRINEDRTATLYDANVTDQNNVFYNSLNQQKVGWIMAYLCDSGKVIYIDPPVGITTSANFIIPEQNNELQRYEVTFSWRQKSIPTQFAAPAGIF
Ga0209829_1000072940	F061497	N/A	MIDITIEGGYVTFTTSVFGEIASNVELCEVVDEFTLHLGTNVGIFLINVNQFTFNGIKFTDSTKAVNYILNN
Ga0209829_100007298	F028725	AGAAG	MPRKLWHRFNRWSNKQTSYNLVKVFTKDGYNYLRFPKETNMPLERFSMSMALLERLSSGISGSEMDMILEGMEKALSAGLSNPKNAALVATYIHIIRERQDTIIHRDLLLNIAATWIIRDDEDPTIINNDIHKEKLEVFEKMCKEGSHDFFTRLGIEPLIPLMSMSPEDFKKLWEYNVEAQRNLIKALTHLDSHHDTERVKRPRELKIK