Scaffold Ga0209829_10000440

Overview

Basic Information

• Taxon OID: 3300027777
• Scaffold ID: Ga0209829_10000440
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_140205_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38143
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (75.93%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001937	Metagenome / Metatranscriptome	614	Y
F003658	Metagenome	474	Y
F095139	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209829_1000044010	F003658	N/A	MSPDNLKGIPAFACICGSKVFNVRLMWDEETRLPGWYDLEQECFECGTLLTAPTPIDEGMDCA
Ga0209829_1000044015	F001937	N/A	MFSTDTASIVYSYFFVFVTILAGLSLVARHTIAKYTDELKDKLSKIEYALYNDGHTGLINKVDQLIENQQSIKIDVEVMKARIE
Ga0209829_100004407	F095139	AGAAG	VKQIAATTPSNDNIIICWCDNGTTDGKFTEGLVYSIINAKIPIRSAMRVQGNQIGRQRQNAFDYWIDNTDFPWILWVDSDIVLTERVLQMVWNECDPTTKPVVTGTYFISKENEQSLMTPYPALFSFTDNKYEVAYIHPLPENALAKIGAAGFGFLFMHRSAALKMREVHGTIPFFNETGVGKEFVSEDINFFRAMAEAEVPLYAHTGATVQHMKRFSFDLEYYKMFWNNKS