Scaffold Ga0209829_10000431

Overview

Basic Information

• Taxon OID: 3300027777
• Scaffold ID: Ga0209829_10000431
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_140205_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38634
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048855	Metagenome	147	Y
F051066	Metagenome	144	Y
F053985	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209829_1000043113	F048855	GGAG	MITTEIHDDRTRTVSYYGRLLGHYGPVRYKRTGSRAWRCVSVLGALGYVANERDARAWLMEMVP
Ga0209829_1000043114	F051066	GAGG	MAKRKSYLDRDAAENQKPYPKLAGLDRYRRNPDADRRAYGQAVLSAIRALQARELARELPSHPCPCASGVWASDGQEILRAVRAQNRRA
Ga0209829_100004314	F053985	GGAG	MFKIGINEHDAIAYVKIQIAGKAIHEAALLAYYCDGRRKTQFHEEMEREIDELLTLLGVDDNLSTNAIDERIETLEYRIENLRAGLRAIERLPPRERDAAWTEATNTLREDDEFAAHAAKPIR