Scaffold Ga0209829_10000206

Overview

Basic Information

• Taxon OID: 3300027777
• Scaffold ID: Ga0209829_10000206
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_140205_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 54432
• Total Scaffold Genes: 77
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 62 (80.52%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051929	Metagenome / Metatranscriptome	143	Y
F053131	Metagenome	141	Y
F068595	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209829_1000020658	F051929	AGGAG	MTEQYLAGGSEFLYPKAGDPRPPMTTKILLLTQGGVCIPGFWNDHWCLGWLPLPKRNTAKEDTKQAD
Ga0209829_1000020661	F068595	N/A	MIDPITLIATARATIAGVKQAIALGKDASELFHQFFDAKDAVMKEKASPTKNPFQSVNSQAMQFIQLAEEMQQVEEEIKNSFMRRGKTNLWMDFLRERNRIVAQNKKDEVEADKAKAKRKKEIEEVIELVLLIAAIAALLTLVAWGTAQYVAFMGK
Ga0209829_1000020664	F053131	AGGA	MEFKWSINKVTVAEDNLVVKVDLTVTATDGDSTASAAYTCTLARGDLFIPYDQLTEEQVLAWCFEPVVTTWTDMDGVEQSSTSLIKDEGEAQVAGQIARQLAQAAAEPALPWVTA