NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209829_10000195

Scaffold Ga0209829_10000195


Overview

Basic Information
Taxon OID3300027777 Open in IMG/M
Scaffold IDGa0209829_10000195 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_140205_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)55982
Total Scaffold Genes78 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)67 (85.90%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000952Metagenome / Metatranscriptome822Y
F016248Metagenome248Y
F029032Metagenome189Y
F068595Metagenome124Y
F083928Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0209829_1000019537F083928GGAGMNALQYLNSLRPAIPMSVEKPCIEMSNGELRRHMKQGAILINGESITPEEEIDFPVFSLVFFPKSQNRRTTLV
Ga0209829_1000019544F016248AGGAGMEKELSPLARQLLGANNHVKFYTQQEFDQALALAKAEIMAVAVQTTKHAIAIENEACAEMADNCTDIEKLGETIRNRWKRPTEH
Ga0209829_1000019555F000952AGGAGMATSNNSQTGELVKQHKRMAMGEKLDGTSMQPKGGSKPAGGLSALAKKKK
Ga0209829_1000019576F068595GGAMLDPITLIATARATIAGVKQAIALGKDASDLWHQFFDVKDAVMKEKAKPSKNPFQSANSQALQFIQLAEEMQQVEEQIKMSFMRRGKTNLWMDFLRERNRIVAENKANELEAEKAKAKKKKEIEEALELLFYIVAGVALIALVAWGTTEYVDFMRK
Ga0209829_100001958F029032N/AMIAQVYDPRNLTWDAWCALMAEQYAANQLGVSPESQWREWANALSGIGRFPGAPSANGFDTWQDWAFALANTIRR
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