Scaffold Ga0209829_10000184

Overview

Basic Information

• Taxon OID: 3300027777
• Scaffold ID: Ga0209829_10000184
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_140205_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56789
• Total Scaffold Genes: 96
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 70 (72.92%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001507	Metagenome / Metatranscriptome	681	Y
F001937	Metagenome / Metatranscriptome	614	Y
F019426	Metagenome	229	Y
F028070	Metagenome / Metatranscriptome	192	Y
F028168	Metagenome	192	Y
F041564	Metagenome / Metatranscriptome	159	Y
F042147	Metagenome / Metatranscriptome	158	Y
F064358	Metagenome / Metatranscriptome	128	Y
F071905	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209829_1000018415	F001937	AGG	MKFFDSNTASIVYSYLFIFIALLAGAGYVVKHFISSHTEELSEQLNKIMYALYNDGKTGLINKVDDLLEHQQSIKIDVEVLKARMEDNLK
Ga0209829_1000018431	F064358	AGGAG	MLCYSCGKSKNELQPFKSSLIDGVSLFMCQTCIDSKFEPRWVVILAGRQNGAEYVREYIIKHRYVGRPISAEEIVA
Ga0209829_1000018433	F028070	N/A	MAKITYTVEMAKKIRDIKCPVKNLKMEIRARPNYLAVTVFEENVMEYTESQRFQLMEYLLLVRSLIQSYGTPCELEGLKYPNDRKS
Ga0209829_1000018437	F019426	N/A	MCKDGFLRPCSFRKETMKVLVFGSKEWTNYNDLIRQVTLLIEDNKFLYPDDKEYTFVHKGIKGAENMITEYIGKTEKFLRQKGYRIKEELIRDKSSLSDVKMIESEPSIALVFGESTRNRQCIKLMEAFGVPYRFFEE
Ga0209829_1000018440	F041564	AGGA	MEYDPSNEEHQAIMEYLIAEGAANFDGIDEDGEPIYVFDMDVLEDVMPELHAVMQEDIDKELINLYQKGLIEVSYDEDLNAIMNISEQGKIALAEAGFAIDESEDI
Ga0209829_1000018453	F042147	GGA	MLANGTINTIEDKDDIYISLTELCDYFVQSSVNMKQEIRHTNPADKRYASGLYDMMHTIAQEVCELGKFEAQRRMIDGPEDLLDLIDKHNKNNVE
Ga0209829_1000018460	F071905	AGGAGG	MAKGYTPWENRDWVYKRYVLEKKSVLQMAMEARCSHMTIQRALEKFDLIKKPRKWTK
Ga0209829_1000018465	F028168	N/A	MIGKMDKPTIELVNELTEFNDIKTYMNDPDLDYALDLIVKLIAKPDVPSTKAPDLIVKMQALSAKFAVMARFYTTFEKGGENAKKKNVYFTAEEAISKLVDALKYSARYGA
Ga0209829_100001848	F001507	AGGA	MQTKYKPYTIDELVTLIYEENLGHFEYMENMNGGDCDCNLHQTMKTIVDYWGE