Scaffold Ga0209829_10000027

Overview

Basic Information

• Taxon OID: 3300027777
• Scaffold ID: Ga0209829_10000027
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_140205_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 120221
• Total Scaffold Genes: 184
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 163 (88.59%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008806	Metagenome	327	Y
F009327	Metagenome / Metatranscriptome	319	Y
F014968	Metagenome	258	Y
F016389	Metagenome / Metatranscriptome	247	Y
F019997	Metagenome / Metatranscriptome	226	Y
F030064	Metagenome	186	Y
F035737	Metagenome / Metatranscriptome	171	Y
F091303	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209829_10000027122	F014968	GAGG	VSHIVTLSKEEVRACADIALNRWMMKFGSIDRPNYAGDNKAKLEPEIAANVRSIVAEYAVAKLYKLPLTFPFYPNEEHSYRKDIADVGTNIEVKSVRTRDEIPVFPKDIRDGWVLVGARVLDRDYYSEVEVFGWLPMADVQRDEWKYAPEGSWRIPLDEFNQEMLNS
Ga0209829_10000027142	F091303	GGAGG	MSDKVPQLNRKSLSINPNRNIRKTEFVFDANLGYKSVAEPSIVSWANRGKGVQGETVNSQNVASKFVIRKAGKAL
Ga0209829_10000027145	F019997	AGGAG	MDINVLKAAGATWLRASAAAVAALYMSGISDPKVLANAFIAGLLGPAAKFINPKDPSYGFGKK
Ga0209829_10000027146	F030064	AGGAG	VTITNFFMTLGIVAGALISLGVLLSPLYKRIKKFMQWMERFMRDWEGEEVSPGRDAVPGVMERLNRMDGELSQNGGYTTVKDRVNRLYENQGDVMNKQDVLLEAFVEMGERLISIENCLNKSEVTATTPIV
Ga0209829_10000027150	F016389	GAG	MKLIRKFAVQGHSIPQSTHSPRGPFPPEVLAGPQMTLEEGHADSLHVGLDDVRFFQCKECHTVLETHELEDHDCSDFK
Ga0209829_1000002720	F009327	AGGAG	MRGNKVQGRFKIDFENKSMEEGVVDELRDPVGTEVDWYVWDANYFETNPALVLDSIYDTSNQEDGKGRRWIAPLKMPVIMAQQLRGTNTPNERGFYTVDNLRLVMSVADVNRLLPVMLTEPTAHIKDRIIFQNTVFTPTRVLPRGRYANFYSVVTVDLSQCNPEELVNDSQFQSYAN
Ga0209829_1000002732	F008806	GGAGG	MSFLLDEDEALRNLLKDMIVTDQKSVTEAGAQRKVGVWFGQPDQEIRSQSYPYITIDMIDIAEDVSRAHRGKVSPAYYANPATMVAASQGVQQVSYNPAIHGKDMDFPIPVNIDYQITTYARQPRHDREVLAQLLYTKIPLRFGVLLTGANTVSGTHRRLDVLDISKRDVTEQGKRLFVNAITVRISSEIAPSTFNKFYKVQNLTVTGTTGSQVIGRGQFTAINSFTTSAP
Ga0209829_1000002764	F035737	GGAG	MSKKEFIVNDEAWAHDLEKGVEDYTDMLFEAVWEGTEDVIPETLSGELFCGCSSCFWRETLFFLVPKLIAGYEEGKIELEN