Scaffold Ga0209277_10008941

Overview

Basic Information

• Taxon OID: 3300027776
• Scaffold ID: Ga0209277_10008941
• Source Dataset Name: Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 8/11/14 A brown DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4607
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Oomycota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Nutrient Removal → Unclassified → Unclassified → Wastewater Effluent → Wastewater Effluent Complex Algal Communities From Wisconsin, To Seasonally Profile Nutrient Transformation And Carbon Sequestration

Source Dataset Sampling Location

• Location Name: Milwaukee, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.023
  • Long. (^o): -87.895
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035199	Metagenome / Metatranscriptome	172	Y
F057918	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209277_100089411	F057918	N/A	MPKLSKKATLIKEYEAVVASRVRKAYIRFCLDDEDNFEDEIDECMLRELVVLKESRYIFRGSYRQWETTWERVLYDGKYLTDDEFLSHFRMDRSCVMQLNSLVENDQEFSGVYGKLGKRSSMIHVMVLLKFLGSYGNEAALAKLGLMLGISKGAVNDYI
Ga0209277_100089413	F035199	GAGG	VIKDKKDLDAILRQAMCACILNDLLIDHPVLPDWFDETLEELDQDDELNQSVEQSGGDTRRNQVFRGALA