NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209177_10122163

Scaffold Ga0209177_10122163


Overview

Basic Information
Taxon OID3300027775 Open in IMG/M
Scaffold IDGa0209177_10122163 Open in IMG/M
Source Dataset NameAgricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)853
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.8834Long. (o)-83.4195Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022275Metagenome / Metatranscriptome215Y
F045643Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0209177_101221631F045643N/AEVYDAFSVKMPIEPDVKPKGCSDNNHIAKRQFEKHLTVDETYQSRAAKTAAKGLAEAGVRLAMILNDAAKSNP
Ga0209177_101221633F022275N/ANLPSGWTLRISSGFGLNDNSHRFLLRWGVSREISGFGSMVSRLFRGGQ

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