Scaffold Ga0209177_10001090

Overview

Basic Information

• Taxon OID: 3300027775
• Scaffold ID: Ga0209177_10001090
• Source Dataset Name: Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4620
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.8834
  • Long. (^o): -83.4195

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012927	Metagenome / Metatranscriptome	276	Y
F015272	Metagenome / Metatranscriptome	256	Y
F017897	Metagenome / Metatranscriptome	238	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209177_100010903	F017897	GGCGG	LALVAGMKTSSPTIVLLADRRHSQTAKALKSSGYHLVTTFTPDHAVAICVNNRVDVVILDQEHFIQTEGWSVAKSLKMIRANLCVVLVVRGKIVGSEPPDGVDAVVPDHDAQALLASLKHLLKGF
Ga0209177_100010904	F012927	AGG	MSAYAFLLVVLALVCTSALFFFFGRLSRFPCRTIRDVPAFLQPVDSANMMQLLNPETEEYLHSAMTGVALRLEQRRSLHFLREHLIRMSHNAHILLEWSNAELKREIVGQSEEYSECYRDCARQLHSAAIEFRLYAALSLFKIKLWLVFRTQPWIPLEPPILSDLGHVGSLRFFTLYSNLTRAVSNLGQHYGPEFCDEVLKAWAVAA
Ga0209177_100010905	F015272	N/A	VNLSSTLGLVGPVLQTCLVFLLVRRRASITFPFFFAYTVFAVLAELCKFALSLHQRNTLSYFYLYWGAEVVYAVLGFLAIHEVFRRVFENFNRLPWFEFLLPGVGVIMVGIAFLIPVVHPPVQTEPLLETIFSLQIAVRCLQLGVFFLIFLLARIFDLDYRQYAFGIAVGFGIAAAGILLGTLVRTGLGLDFIIFFQYFPSVAYCIAVTVWLASFVRPEPDDPFRDFRHLFTPELFVKQLQRYKQEVRGIFKP