Scaffold Ga0209433_10071911

Overview

Basic Information

• Taxon OID: 3300027774
• Scaffold ID: Ga0209433_10071911
• Source Dataset Name: Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_5_50m (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1257
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Oxygen Minimum Zone In The Mesopelagic Equatorial Pacific

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 0.0
  • Long. (^o): -158.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005813	Metagenome / Metatranscriptome	389	Y
F029594	Metagenome	188	Y
F103094	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209433_100719111	F103094	AGGAG	MKSEKLNIEVTLSSENSCYLGIKDYIIYVEVSQATENKPLVS
Ga0209433_100719112	F005813	GAGG	MRLYKNSNGVWAGTQADARKYCGKDYSTVDVPTDKPSLLAFLNLNQVGSLASSPTLEEVRTGEPTTSAMSWFRWSYDCMCRGQYEDAKEHLAKALELSKVEKQDDS
Ga0209433_100719114	F029594	GAGG	MLPDEMEAEKNRKIILAQADEIEILKKNVRDLQEQLTASHIRIKELIK