Scaffold Ga0209433_10065859

Overview

Basic Information

• Taxon OID: 3300027774
• Scaffold ID: Ga0209433_10065859
• Source Dataset Name: Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_5_50m (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1309
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Oxygen Minimum Zone In The Mesopelagic Equatorial Pacific

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 0.0
  • Long. (^o): -158.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004493	Metagenome	436	Y
F018289	Metagenome	236	Y
F052260	Metagenome / Metatranscriptome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209433_100658592	F052260	AGGAG	MFVIFATKPLNDGTKGFRFNFLGKKGIVRRRKLQSNGIKFTQGDCMNAYHIGKTTVYTEKSSNTTTGRKFRHVAG
Ga0209433_100658593	F018289	GAGG	MSEFTRKQLDTIRKQMQNALNMFADKTDIQIEVGNCSYRGGEATFKVKVLMEGAKTREQQDLEFYAKLHKLDLNKTAKLMGEDMQLSGYKARARKKPWILKRLRDGAEFVADTNMVEKFFPEYAF
Ga0209433_100658594	F004493	AGGAGG	MQNSITKNNALDFDDEQWSQLINSNGLLIMWFIEWNQKAKDNPLQIQDFFKQCYNMSAGCDPWHMKDAKISLDGKYVSEGDDDLEPYFLINTDDGVGYIYPYAFVALPLKGGGHHVVRMD