Scaffold Ga0209433_10017438

Overview

Basic Information

• Taxon OID: 3300027774
• Scaffold ID: Ga0209433_10017438
• Source Dataset Name: Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_5_50m (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2376
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Oxygen Minimum Zone In The Mesopelagic Equatorial Pacific

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 0.0
  • Long. (^o): -158.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012583	Metagenome / Metatranscriptome	279	Y
F025518	Metagenome / Metatranscriptome	201	Y
F034959	Metagenome / Metatranscriptome	173	Y
F084358	Metagenome	112	N
F096162	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209433_1001743811	F096162	N/A	LMIKELTEDQLIELKSEFVDFKLNEMTNKELRDYVRSIMLLEIDPDPEILKDEIDSYDDNLYEVLVPYVLDEEGSWEIMEEFKHDRREQW
Ga0209433_100174382	F034959	GAGG	MKIEVNKEQLEILKYAVLWYECNDMKEEKLIDELEVILYNAQEQDLLRSVTTLGDLN
Ga0209433_100174383	F025518	GGAGG	MTKKKLVHNTKTSLREEAKEYLPTVKEFYPHLDDLLLDRISKYCVVYSKGKDKASIRQAINDFEQTFDEELTQ
Ga0209433_100174385	F012583	GGAGG	MSLSEQVKIQAFDKYIMRGGDQSLRNIEDMCDFGFNMCQLGYDTETFNDVVIDVIRKLTERLS
Ga0209433_100174389	F084358	AGGAG	MTLIDFDKKELLDIYQALLCYRTDMTIIDPKGNGLTDEQKAFYHRLSDLMEKVGNVRKMCTCKENVSNDT